If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 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'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ), 'gf_id' => 'HOM05D000919', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000919' ), 'data_identifier' => 'HOM05D000919', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000919', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p20080' => 'bna', 'A01p20090' => 'bna', 'A02p31410' => 'bna', 'A03p33170' => 'bna', 'A03p50380' => 'bna', 'A05p44240' => 'bna', 'A06p44990' => 'bna', 'A09p23080' => 'bna', 'A09p24420' => 'bna', 'A10p20730' => 'bna', 'Aa31LG11G10780' => 'aar', 'Aa31LG9G12220' => 'aar', 'Aa31LG9G12230' => 'aar', 'Aa31sc118G110' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1965' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5473' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1463' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.709' => 'aag', 'Actinidia00074' => 'ach', 'Actinidia00075' => 'ach', 'Actinidia10763' => 'ach', 'Actinidia11889' => 'ach', 'Actinidia11890' => 'ach', 'Actinidia21450' => 'ach', 'Actinidia39274' => 'ach', 'Ah.06g188430' => 'amhyb', 'Ah.09g234150' => 'amhyb', 'Ah.09g234160' => 'amhyb', 'Ah.14g087530' => 'amhyb', 'AL3G12290' => 'aly', 'AL5G13160' => 'aly', 'AL6G30290' => 'aly', 'AL7G37430' => 'aly', 'AL8G10430' => 'aly', 'Aqoxy1G04034' => 'aox', 'Aqoxy1G04035' => 'aox', 'Aqoxy4G02193' => 'aox', 'Aqoxy5G00556' => 'aox', 'Aqoxy7G01803' => 'aox', 'arahy.Tifrunner.gnm1.ann1.06QESN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1G3A4W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.321WPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.39IMTY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R3P3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7C2YYF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FX3851' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0VDJ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NCUU5J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NDK424' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NU7K1K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q437N3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5ZZYH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3WFR9' => 'arhy', 'AT2G03410' => 'ath', 'AT3G02870' => 'ath', 'AT4G17270' => 'ath', 'AT5G18940' => 'ath', 'AT5G47540' => 'ath', 'ATR0626G304' => 'atr', 'ATR0712G014' => 'atr', 'ATR0712G048' => 'atr', 'Atru.chr1.2379' => 'acertr', 'Atru.chr1.2380' => 'acertr', 'Atru.chr10.490' => 'acertr', 'Atru.chr2.3599' => 'acertr', 'Atru.chr4.2692' => 'acertr', 'Atru.chr5.1369' => 'acertr', 'Atru.chr6.1706' => 'acertr', 'Atru.chr6.3340' => 'acertr', 'AUR62000569' => 'cqu', 'AUR62006922' => 'cqu', 'AUR62012810' => 'cqu', 'AUR62012811' => 'cqu', 'AUR62015932' => 'cqu', 'AUR62021842' => 'cqu', 'AUR62021843' => 'cqu', 'AUR62040677' => 'cqu', 'BcaB04g19381' => 'bca', 'BcaB07g30415' => 'bca', 'BcaB07g30671' => 'bca', 'BcaB07g30772' => 'bca', 'BcaB08g36634' => 'bca', 'BcaC01g04424' => 'bca', 'BcaC03g16969' => 'bca', 'BcaC04g18637' => 'bca', 'BcaC04g21489' => 'bca', 'BcaC04g21490' => 'bca', 'BcaC04g21618' => 'bca', 'BcaC05g30500' => 'bca', 'BcaC06g31375' => 'bca', 'BcaC06g33545' => 'bca', 'BcaC06g34242' => 'bca', 'BcaC06g34245' => 'bca', 'BcaC07g38112' => 'bca', 'BcaC09g50460' => 'bca', 'BcaNung03468' => 'bca', 'BolC1t02471H' => 'bol', 'BolC2t10967H' => 'bol', 'BolC2t11230H' => 'bol', 'BolC3t16300H' => 'bol', 'BolC5t35057H' => 'bol', 'BolC7t43660H' => 'bol', 'BolC7t45377H' => 'bol', 'BolC9t55977H' => 'bol', 'BolC9t58628H' => 'bol', 'BraA01t01932Z' => 'bra', 'BraA01t01933Z' => 'bra', 'BraA02t08143Z' => 'bra', 'BraA03t12488Z' => 'bra', 'BraA03t14128Z' => 'bra', 'BraA06t23281Z' => 'bra', 'BraA06t27370Z' => 'bra', 'BraA09t37912Z' => 'bra', 'BraA09t38035Z' => 'bra', 'BraA10t44136Z' => 'bra', 'C01p25220' => 'bna', 'C02p48750' => 'bna', 'C02p51420' => 'bna', 'C03p40360' => 'bna', 'C07p31190' => 'bna', 'C07p48700' => 'bna', 'C09p29830' => 'bna', 'C09p31210' => 'bna', 'C09p57590' => 'bna', 'C09p76000' => 'bna', 'CAN.G1263.21' => 'can', 'CAN.G337.41' => 'can', 'CAN.G449.21' => 'can', 'CAN.G696.22' => 'can', 'CAN.G696.23' => 'can', 'CAN.G889.19' => 'can', 'CANSAT56G3054' => 'cansat', 'CANSAT56G3845' => 'cansat', 'CANSAT64G0209' => 'cansat', 'CANSAT78G2256' => 'cansat', 'CARHR076880' => 'chi', 'CARHR145750' => 'chi', 'CARHR173810' => 'chi', 'CARHR194050' => 'chi', 'CARHR223900' => 'chi', 'Carub.0003s0197' => 'cru', 'Carub.0005s0237' => 'cru', 'Carub.0006s1724' => 'cru', 'Carub.0007s2412' => 'cru', 'Carub.0008s0024' => 'cru', 'Ca_00595_v3' => 'car', 'Ca_00731_v3' => 'car', 'Ca_00732_v3' => 'car', 'Ca_21012_v3' => 'car', 'Ca_21019_v3' => 'car', 'CBR_g49890' => 'cbr', 'CBR_g6653' => 'cbr', 'CBR_g9148' => 'cbr', 'Cc02_g07850' => 'ccan', 'Cc05_g14520' => 'ccan', 'Cc09_g00720' => 'ccan', 'Cc09_g00750' => 'ccan', 'Cc09_g00770' => 'ccan', 'Cc09_g00780' => 'ccan', 'Cc11_g04250' => 'ccan', 'CDE04G0895' => 'cde', 'CDE04G1618' => 'cde', 'CDE05G1640' => 'cde', 'CDE07G0061' => 'cde', 'Cfa000087' => 'cfa', 'Cfa015546' => 'cfa', 'Ciclev10005330m.g' => 'ccl', 'Ciclev10015760m.g' => 'ccl', 'Ciclev10015837m.g' => 'ccl', 'Ciclev10015919m.g' => 'ccl', 'Ciclev10017102m.g' => 'ccl', 'Ciclev10017691m.g' => 'ccl', 'CiPaw.01G157400' => 'cil', 'CiPaw.09G103600' => 'cil', 'CiPaw.09G103800' => 'cil', 'CiPaw.10G078700' => 'cil', 'CiPaw.10G078800' => 'cil', 'ClCG01G010420' => 'cla', 'ClCG01G010540' => 'cla', 'ClCG01G021440' => 'cla', 'ClCG02G002600' => 'cla', 'ClCG06G005670' => 'cla', 'COL.COLO4_13979' => 'col', 'COL.COLO4_31900' => 'col', 'COL.COLO4_31901' => 'col', 'Cpa.g.sc16.60' => 'cpa', 'Cpa.g.sc395.5' => 'cpa', 'Cpa.g.sc75.101' => 'cpa', 'Cpa.g.sc75.102' => 'cpa', 'Cre06.g278202' => 'cre', 'Cre08.g376100' => 'cre', 'Cre17.g709950' => 'cre', 'CsaV3_1G017100' => 'csa', 'CsaV3_1G017130' => 'csa', 'CsaV3_6G005480' => 'csa', 'CsaV3_6G048460' => 'csa', 'CsaV3_7G002740' => 'csa', 'CSS0007707' => 'camsi', 'CSS0012918' => 'camsi', 'CSS0013410' => 'camsi', 'CSS0016248' => 'camsi', 'CSS0019004' => 'camsi', 'CSS0020272' => 'camsi', 'CSS0029661' => 'camsi', 'CSS0031714' => 'camsi', 'CSS0037254' => 'camsi', 'CSS0037637' => 'camsi', 'CSS0041040' => 'camsi', 'CSS0047134' => 'camsi', 'CSS0049079' => 'camsi', 'DCAR_002226' => 'dca', 'DCAR_004903' => 'dca', 'DCAR_004906' => 'dca', 'DCAR_011431' => 'dca', 'DCAR_019717' => 'dca', 'DCAR_027814' => 'dca', 'Dinv05847' => 'din', 'Dinv07413' => 'din', 'Dinv10297' => 'din', 'Dinv13974' => 'din', 'Dinv13975' => 'din', 'Dinv16908' => 'din', 'Dinv44462' => 'din', 'Duzib151G1157' => 'dzi', 'Duzib160G0201' => 'dzi', 'Duzib160G0724' => 'dzi', 'Duzib211G0002' => 'dzi', 'Duzib212G0022' => 'dzi', 'Duzib235G0451' => 'dzi', 'Duzib235G1358' => 'dzi', 'Duzib266G0002' => 'dzi', 'ECA203G0002' => 'eca', 'ECA232G4869' => 'eca', 'ECA233G2441' => 'eca', 'ECA234G0203' => 'eca', 'ECA234G2161' => 'eca', 'ECA240G0081' => 'eca', 'ECA248G0498' => 'eca', 'EL10Ac4g07631' => 'bvu', 'EL10Ac4g09692' => 'bvu', 'EL10Ac8g20216' => 'bvu', 'EL10Ac8g20217' => 'bvu', 'Eucgr.D00263' => 'egr', 'Eucgr.E03917' => 'egr', 'Eucgr.E03918' => 'egr', 'FAN02G2964' => 'fan', 'FAN05G5620' => 'fan', 'FAN07G0624' => 'fan', 'FAN09G0816' => 'fan', 'FAN12G0572' => 'fan', 'FAN14G4841' => 'fan', 'FAN17G2793' => 'fan', 'FAN21G0953' => 'fan', 'FAN21G3460' => 'fan', 'FAN21G3723' => 'fan', 'FAN25G1217' => 'fan', 'FvH4_3g00781' => 'fve', 'FvH4_3g00790' => 'fve', 'FvH4_4g14070' => 'fve', 'FvH4_6g41330' => 'fve', 'Glyma.02G306900' => 'gma', 'Glyma.07G107050' => 'gma', 'Glyma.07G266100' => 'gma', 'Glyma.07G266200' => 'gma', 'Glyma.09G011000' => 'gma', 'Glyma.09G011100' => 'gma', 'Glyma.13G211500' => 'gma', 'Glyma.14G006200' => 'gma', 'Glyma.15G101200' => 'gma', 'Glyma.15G115400' => 'gma', 'Glyma.15G115500' => 'gma', 'Glyma.16G132400' => 'gma', 'Glyma.17G008100' => 'gma', 'Glyma.19G189800' => 'gma', 'Gohir.A05G174900' => 'ghi', 'Gohir.A05G175000' => 'ghi', 'Gohir.A06G154200' => 'ghi', 'Gohir.A08G049500' => 'ghi', 'Gohir.A09G060600' => 'ghi', 'Gohir.A10G008700' => 'ghi', 'Gohir.A10G008800' => 'ghi', 'Gohir.D05G177900' => 'ghi', 'Gohir.D05G178000' => 'ghi', 'Gohir.D06G160900' => 'ghi', 'Gohir.D08G059600' => 'ghi', 'Gohir.D09G059700' => 'ghi', 'Gohir.D10G008400' => 'ghi', 'Gohir.D10G008500' => 'ghi', 'Gorai.004G061500' => 'gra', 'Gorai.006G074300' => 'gra', 'Gorai.009G183300' => 'gra', 'Gorai.009G183400' => 'gra', 'Gorai.010G187800' => 'gra', 'Gorai.011G009200' => 'gra', 'Gorai.011G009300' => 'gra', 'GSVIVG01006719001' => 'vvi', 'GSVIVG01017860001' => 'vvi', 'GSVIVG01030034001' => 'vvi', 'GSVIVG01037761001' => 'vvi', 'HanXRQChr03g0075771' => 'han', 'HanXRQChr05g0129091' => 'han', 'HanXRQChr10g0306401' => 'han', 'HanXRQChr10g0306741' => 'han', 'HanXRQChr11g0325841' => 'han', 'HanXRQChr16g0516531' => 'han', 'HanXRQChr17g0546161' => 'han', 'HanXRQChr17g0559551' => 'han', 'HanXRQChr17g0559571' => 'han', 'Haze_01002' => 'cav', 'Haze_06946' => 'cav', 'Haze_06954' => 'cav', 'Haze_26303' => 'cav', 'Haze_26821' => 'cav', 'Hma1.2p1_0036F.1_g022870' => 'hma', 'Hma1.2p1_0060F.1_g033413' => 'hma', 'Hma1.2p1_0133F.1_g061200' => 'hma', 'Hma1.2p1_0511F.1_g169200' => 'hma', 'Hma1.2p1_2025F.1_g311490' => 'hma', 'HPP92_000391' => 'vpl', 'HPP92_001834' => 'vpl', 'HPP92_024885' => 'vpl', 'Hund21777' => 'sun', 'Hund23167' => 'sun', 'Hund23401' => 'sun', 'Hund23402' => 'sun', 'Lalb_Chr13g0304311' => 'lal', 'Lalb_Chr17g0349151' => 'lal', 'Lalb_Chr18g0055951' => 'lal', 'Lalb_Chr18g0057051' => 'lal', 'Lalb_Chr20g0118291' => 'lal', 'Lalb_Chr20g0119311' => 'lal', 'Lalb_Chr20g0119321' => 'lal', 'Lj1A1241G68' => 'lonja', 'Lj1C1241T3' => 'lonja', 'Lj1g0027279' => 'lja', 'Lj2C260T11' => 'lonja', 'Lj2C260T12' => 'lonja', 'Lj3A805G60' => 'lonja', 'Lj4g0009836' => 'lja', 'Lj4g0017450' => 'lja', 'Lj6g0026420' => 'lja', 'Lj6g0027107' => 'lja', 'Lj8A133T57' => 'lonja', 'Lj8A175T75' => 'lonja', 'Lsat_1_v5_gn_4_63300' => 'lsa', 'Lsat_1_v5_gn_4_91020' => 'lsa', 'Lsat_1_v5_gn_5_123141' => 'lsa', 'Lsat_1_v5_gn_6_14801' => 'lsa', 'Lsat_1_v5_gn_6_90121' => 'lsa', 'Lsat_1_v5_gn_7_113380' => 'lsa', 'Lsat_1_v5_gn_7_13780' => 'lsa', 'Lsat_1_v5_gn_9_105700' => 'lsa', 'Manes.02G106400' => 'mes', 'Manes.03G187400' => 'mes', 'Manes.08G069730' => 'mes', 'Manes.08G070848' => 'mes', 'Manes.09G076000' => 'mes', 'Manes.15G020600' => 'mes', 'Manes.15G064400' => 'mes', 'Mapoly0002s0010' => 'mpo', 'Mapoly0046s0074' => 'mpo', 'Mapoly0074s0073' => 'mpo', 'MBI16_g42315_MAGBIO' => 'mbi', 'MBI16_g42316_MAGBIO' => 'mbi', 'MBI17_g29024_MAGBIO' => 'mbi', 'MBI19_g06158_MAGBIO' => 'mbi', 'MCO07G744' => 'mco', 'MCO09G192' => 'mco', 'MD05G1359100' => 'mdo', 'MD05G1359400' => 'mdo', 'MD09G1120500' => 'mdo', 'MD10G1334800' => 'mdo', 'MD10G1334900' => 'mdo', 'MD13G1179400' => 'mdo', 'MD16G1180500' => 'mdo', 'MD17G1111400' => 'mdo', 'Medtr0003s0650' => 'mtr', 'Medtr2g021040' => 'mtr', 'Medtr2g026050' => 'mtr', 'Medtr2g026060' => 'mtr', 'Medtr4g027470' => 'mtr', 'Medtr4g028570' => 'mtr', 'Medtr4g028580' => 'mtr', 'Medtr4g133600' => 'mtr', 'MELO3C007440.2' => 'cme', 'MELO3C021389.2' => 'cme', 'MELO3C024215.2' => 'cme', 'MELO3C025552.2' => 'cme', 'MELO3C025555.2' => 'cme', 'Migut.G00247' => 'egut', 'Migut.G01054' => 'egut', 'Migut.H01611' => 'egut', 'Migut.H01612' => 'egut', 'Migut.K01249' => 'egut', 'Migut.M01411' => 'egut', 'Migut.M01412' => 'egut', 'Migut.M01690' => 'egut', 'Migut.O00379' => 'egut', 'MSTRG.14607' => 'ama', 'MSTRG.14608' => 'ama', 'MSTRG.16029' => 'ama', 'MSTRG.16030' => 'ama', 'MSTRG.23922' => 'ama', 'MSTRG.3977' => 'ama', 'MSTRG.6973' => 'ama', 'MSTRG.7158' => 'ama', 'Nitab4.5_0000059g0100' => 'nta', 'Nitab4.5_0000143g0120' => 'nta', 'Nitab4.5_0000143g0130' => 'nta', 'Nitab4.5_0000535g0160' => 'nta', 'Nitab4.5_0001109g0070' => 'nta', 'Nitab4.5_0001160g0190' => 'nta', 'Nitab4.5_0001735g0120' => 'nta', 'Nitab4.5_0003626g0100' => 'nta', 'Nitab4.5_0003626g0110' => 'nta', 'Nitab4.5_0004362g0010' => 'nta', 'Nitab4.5_0005135g0020' => 'nta', 'Nitab4.5_0005614g0020' => 'nta', 'Nitab4.5_0007190g0020' => 'nta', 'Nitab4.5_0010571g0030' => 'nta', 'Nn1g02103' => 'nnu', 'Nn1g03275' => 'nnu', 'Nn1g03276' => 'nnu', 'Nn1g07422' => 'nnu', 'Nn1g07423' => 'nnu', 'Nn2g13256' => 'nnu', 'Nn4g26136' => 'nnu', 'Oeu009406.1' => 'oeu', 'Oeu016816.1' => 'oeu', 'Oeu016817.1' => 'oeu', 'Oeu017163.1' => 'oeu', 'Oeu019621.1' => 'oeu', 'Oeu023649.1' => 'oeu', 'Oeu036530.1' => 'oeu', 'Oeu037661.1' => 'oeu', 'Oeu052871.1' => 'oeu', 'Os03g0172200' => 'osa', 'Os03g0359700' => 'osa', 'Os03g0587000' => 'osa', 'Os07g0585100' => 'osa', 'Os07g0647100' => 'osa', 'Peaxi162Scf00095g00714' => 'pax', 'Peaxi162Scf00285g00933' => 'pax', 'Peaxi162Scf00352g00711' => 'pax', 'Peaxi162Scf00352g00717' => 'pax', 'Peaxi162Scf00520g00217' => 'pax', 'Peaxi162Scf00610g00126' => 'pax', 'Peaxi162Scf01165g00217' => 'pax', 'PGR004G2894' => 'pgr', 'PGR031G1890' => 'pgr', 'PGR042G0511' => 'pgr', 'PGR042G3907' => 'pgr', 'PGSC0003DMG400008459' => 'stu', 'PGSC0003DMG400012764' => 'stu', 'PGSC0003DMG400013285' => 'stu', 'PGSC0003DMG401013284' => 'stu', 'PGSC0003DMG401022195' => 'stu', 'PGSC0003DMG401023603' => 'stu', 'PGSC0003DMG402022924' => 'stu', 'Phvul.003G084400' => 'pvu', 'Phvul.003G084500' => 'pvu', 'Phvul.006G142400' => 'pvu', 'Phvul.006G142500' => 'pvu', 'Phvul.006G157600' => 'pvu', 'Phvul.008G286700' => 'pvu', 'Potri.002G222800' => 'ptr', 'Potri.003G055900' => 'ptr', 'Potri.006G014800' => 'ptr', 'Potri.006G014900' => 'ptr', 'Potri.008G198900' => 'ptr', 'Potri.010G028700' => 'ptr', 'Potri.010G155300' => 'ptr', 'Potri.010G155400' => 'ptr', 'Potri.010G156300' => 'ptr', 'Potri.010G156500' => 'ptr', 'Potri.014G162100' => 'ptr', 'Potri.016G011000' => 'ptr', 'Potri.016G011100' => 'ptr', 'Potri.016G011300' => 'ptr', 'Potri.019G057100' => 'ptr', 'Pp3c17_23520' => 'ppa', 'Pp3c19_5700' => 'ppa', 'Pp3c19_6880' => 'ppa', 'Pp3c21_5760' => 'ppa', 'Pp3c22_3260' => 'ppa', 'Pp3c22_4630' => 'ppa', 'Pp3c2_380' => 'ppa', 'PRCOL_00004145' => 'pco', 'PRCOL_00006261' => 'pco', 'Prupe.1G148000' => 'ppe', 'Prupe.3G203000' => 'ppe', 'Prupe.4G008700' => 'ppe', 'Prupe.4G008800' => 'ppe', 'Psat1g175160' => 'psa', 'Psat1g175240' => 'psa', 'Psat1g185280' => 'psa', 'Psat4g003800' => 'psa', 'PSO210G3609' => 'pso', 'PSO210G6147' => 'pso', 'PSO302G0199' => 'pso', 'PSO541G2781' => 'pso', 'PSO541G5387' => 'pso', 'PSO675G1844' => 'pso', 'PSO675G7231' => 'pso', 'PSO832G3925' => 'pso', 'QL05p069171' => 'qlo', 'QL05p069195' => 'qlo', 'QL06p006047' => 'qlo', 'RcHm_v2.0_Chr2g0156881' => 'rch', 'RcHm_v2.0_Chr4g0419281' => 'rch', 'RcHm_v2.0_Chr5g0001031' => 'rch', 'RcHm_v2.0_Chr5g0001041' => 'rch', 'RcHm_v2.0_Chr5g0047351' => 'rch', 'RcHm_v2.0_Chr6g0245961' => 'rch', 'Rhsim02G0017000' => 'rsi', 'Rhsim02G0100200' => 'rsi', 'Rhsim02G0100800' => 'rsi', 'Rhsim02G0100900' => 'rsi', 'Rhsim02G0102800' => 'rsi', 'Rhsim02G0102900' => 'rsi', 'Rhsim02G0103000' => 'rsi', 'Rhsim04G0015600' => 'rsi', 'Rhsim04G0039800' => 'rsi', 'Rhsim13G0144400' => 'rsi', 'Sabra02G0170000' => 'sbr', 'Sabra06G0010400' => 'sbr', 'Sabra08G0161700' => 'sbr', 'Sabra10G0012200' => 'sbr', 'Sabra14G0123700' => 'sbr', 'Sabra16G0005100' => 'sbr', 'Sabra16G0005300' => 'sbr', 'Sabra16G0005700' => 'sbr', 'Sabra16G0005800' => 'sbr', 'Sabra16G0014500' => 'sbr', 'Sabra16G0014600' => 'sbr', 'Sabra16G0014800' => 'sbr', 'Sabra16G0046300' => 'sbr', 'Sabra16G0046400' => 'sbr', 'SalBow1G1696' => 'sbo', 'SalBow1G3229' => 'sbo', 'SalBow2G0609' => 'sbo', 'SalBow2G2602' => 'sbo', 'SalBow2G3386' => 'sbo', 'SalBow8G0650' => 'sbo', 'SalBow8G0659' => 'sbo', 'Sc03g0008130' => 'sci', 'Sc05g0009660' => 'sci', 'Sc05g0009670' => 'sci', 'Sc17g0007830' => 'sci', 'Sc17g0007840' => 'sci', 'Sc25g0004510' => 'sci', 'Sed0006728' => 'sed', 'Sed0007328' => 'sed', 'Sed0007397' => 'sed', 'Sed0012382' => 'sed', 'Sed0012657' => 'sed', 'Sed0019385' => 'sed', 'SEGI_25311' => 'sgi', 'SEGI_25424' => 'sgi', 'SEGI_28193' => 'sgi', 'SEGI_32732' => 'sgi', 'SEGI_33980' => 'sgi', 'SEGI_38124' => 'sgi', 'SGA_v2.0_scaffold147G36374' => 'sas', 'SGA_v2.0_scaffold171G38898' => 'sas', 'SGA_v2.0_scaffold224G42974' => 'sas', 'SGA_v2.0_scaffold237G43846' => 'sas', 'SGA_v2.0_scaffold49G18236' => 'sas', 'SGA_v2.0_scaffold4G01865' => 'sas', 'SGA_v2.0_scaffold7G03742' => 'sas', 'SGA_v2.0_scaffold89G27511' => 'sas', 'SHI24448' => 'shi', 'SHI24449' => 'shi', 'SHI24450' => 'shi', 'SMO143G0032' => 'smo', 'SMO265G0053' => 'smo', 'SMO347G0024' => 'smo', 'SMO361G0094' => 'smo', 'SMO361G0735' => 'smo', 'Solyc01g080350.3' => 'sly', 'Solyc03g044890.1' => 'sly', 'Solyc04g014800.3' => 'sly', 'Solyc05g054130.4' => 'sly', 'Solyc07g065130.3' => 'sly', 'Solyc11g012400.2' => 'sly', 'Solyc11g012410.2' => 'sly', 'Sopen01g032150' => 'spe', 'Sopen03g009180' => 'spe', 'Sopen04g006930' => 'spe', 'Sopen05g032620' => 'spe', 'Sopen07g033350' => 'spe', 'Sopen11g007150' => 'spe', 'Sopen11g007160' => 'spe', 'Sp2g12270' => 'spa', 'Sp2g14320' => 'spa', 'Sp3g01900' => 'spa', 'Sp6g25450' => 'spa', 'Sp7g16900' => 'spa', 'TAR362G0808' => 'tar', 'TAR624G0930' => 'tar', 'TAR626G0769' => 'tar', 'TAR626G1275' => 'tar', 'TAR626G1625' => 'tar', 'TAR627G0643' => 'tar', 'TAR629G0864' => 'tar', 'TAR636G3214' => 'tar', 'THA.LOC104798372' => 'tha', 'THA.LOC104812780' => 'tha', 'THA.LOC104812803' => 'tha', 'THA.LOC104815485' => 'tha', 'THA.LOC104815486' => 'tha', 'THA.LOC104818826' => 'tha', 'Thecc.01G188900' => 'tca', 'Thecc.04G271200' => 'tca', 'Thecc.06G234800' => 'tca', 'Thecc.06G234900' => 'tca', 'Thhalv10000952m.g' => 'esa', 'Thhalv10005714m.g' => 'esa', 'Thhalv10014002m.g' => 'esa', 'Thhalv10021317m.g' => 'esa', 'Thhalv10025583m.g' => 'esa', 'TPR.G15903' => 'tpr', 'TPR.G18043' => 'tpr', 'TPR.G30454' => 'tpr', 'TPR.G5936' => 'tpr', 'TWI36G1216' => 'twi', 'TWI38G0089' => 'twi', 'TWI53G1620' => 'twi', 'TWI63G1637' => 'twi', 'TWI63G1766' => 'twi', 'TWI63G1802' => 'twi', 'TWI73G0028' => 'twi', 'TWI75G0293' => 'twi', 'unitig_0.g945' => 'ugi', 'unitig_748.g7916' => 'ugi', 'unitig_748.g8588' => 'ugi', 'unitig_749.g14060' => 'ugi', 'vmacro03634' => 'vma', 'vmacro09677' => 'vma', 'vmacro15290' => 'vma', 'vmacro15766' => 'vma', 'vmacro15767' => 'vma', 'vmacro15768' => 'vma', 'VMungo0540G0204' => 'vmu', 'VMungo0540G1313' => 'vmu', 'VMungo0540G1595' => 'vmu', 'VMungo0647G1483' => 'vmu', 'VMungo1215G2407' => 'vmu', 'VMungo1215G2620' => 'vmu', 'Zm00001eb005560' => 'zma', 'Zm00001eb017560' => 'zma', 'Zm00001eb049310' => 'zma', 'Zm00001eb107980' => 'zma', 'Zm00001eb110510' => 'zma', 'Zm00001eb325830' => 'zma' ) $gf_id = 'HOM05D000919' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000919' ) $data_identifier = 'HOM05D000919' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 7, 'amhyb' => (int) 4, 'aly' => (int) 5, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 8, 'bca' => (int) 19, 'bol' => (int) 9, 'bra' => (int) 10, 'can' => (int) 6, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 7, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 6, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 6, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 11, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 4, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 7, 'lonja' => (int) 7, 'lja' => (int) 5, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 4, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 9, 'ama' => (int) 8, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 7, 'pgr' => (int) 4, 'stu' => (int) 7, 'pvu' => (int) 6, 'ptr' => (int) 15, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 4, 'psa' => (int) 4, 'pso' => (int) 8, 'qlo' => (int) 3, 'rch' => (int) 6, 'rsi' => (int) 10, 'sbr' => (int) 14, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 6, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 3, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 6, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 8, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb325830' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1